BioNano Genomics hifi contigs

Hifi Contigs, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews

hifi contigs - by Bioz Stars, 2026-07

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Journal: G3: Genes|Genomes|Genetics

Article Title: Reference genomes for BALB/c Nude and NOD/SCID mouse models

doi: 10.1093/g3journal/jkad188

Figure Lengend Snippet: Basic genome assembly statistics.

Article Snippet: To further improve the continuity of the assembled HIFI contigs, we used Bionano optical maps as anchors for scaffolding.

Techniques:

Identification of reference features that are absent in BALB/c Nude and NOD/SCID mice. a) Circular visualization of annotated reference features that could not be identified in the genome assemblies of BALB/c Nude and NOD/SCID strains. The organization of chromosomes is similar to that in , except that the slices representing the 5 chromosomes with most number of missing protein-coding features were enlarged for clarity. Color codes indicate types of features. b) Close-up view of the highlighted region containing members of the defensin alpha cluster on chromosome 8 (21,859,396-21,942,429; GRCm39). HIFI reads of one representative NOD/SCID (sample 3, upper panel) and BALB/c Nude (sample 6, lower panel) individual aligned to GRCm39 genome using minimap2 and visualized in IGV (Integrative Genomics Viewer) browser in upper and lower panels, respectively. Mismatch coloring was deactivated for clarity.

Journal: G3: Genes|Genomes|Genetics

Article Title: Reference genomes for BALB/c Nude and NOD/SCID mouse models

doi: 10.1093/g3journal/jkad188

Figure Lengend Snippet: Identification of reference features that are absent in BALB/c Nude and NOD/SCID mice. a) Circular visualization of annotated reference features that could not be identified in the genome assemblies of BALB/c Nude and NOD/SCID strains. The organization of chromosomes is similar to that in , except that the slices representing the 5 chromosomes with most number of missing protein-coding features were enlarged for clarity. Color codes indicate types of features. b) Close-up view of the highlighted region containing members of the defensin alpha cluster on chromosome 8 (21,859,396-21,942,429; GRCm39). HIFI reads of one representative NOD/SCID (sample 3, upper panel) and BALB/c Nude (sample 6, lower panel) individual aligned to GRCm39 genome using minimap2 and visualized in IGV (Integrative Genomics Viewer) browser in upper and lower panels, respectively. Mismatch coloring was deactivated for clarity.

Article Snippet: To further improve the continuity of the assembled HIFI contigs, we used Bionano optical maps as anchors for scaffolding.

Techniques:

Identification of reference features that are specifically absent in BALB/c Nude strain. a) GRCm39 features that are absent specifically in BALB/c Nude genome assembly were plotted similarly to that in . b) Close-up view of Klra genes region on chromosome 6 (129,982,946-130,193,356; GRCm39). HIFI reads of one representative NOD/SCID (sample 3, upper panel) and BALB/c Nude (sample 6, lower panel) individual were aligned to GRCm39 genome using minimap2 and visualized similarly to that in .

Journal: G3: Genes|Genomes|Genetics

Article Title: Reference genomes for BALB/c Nude and NOD/SCID mouse models

doi: 10.1093/g3journal/jkad188

Figure Lengend Snippet: Identification of reference features that are specifically absent in BALB/c Nude strain. a) GRCm39 features that are absent specifically in BALB/c Nude genome assembly were plotted similarly to that in . b) Close-up view of Klra genes region on chromosome 6 (129,982,946-130,193,356; GRCm39). HIFI reads of one representative NOD/SCID (sample 3, upper panel) and BALB/c Nude (sample 6, lower panel) individual were aligned to GRCm39 genome using minimap2 and visualized similarly to that in .

Article Snippet: To further improve the continuity of the assembled HIFI contigs, we used Bionano optical maps as anchors for scaffolding.

Techniques:

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